Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 277

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 512 117

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 412 73

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 432 78

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 367 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 276 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 367 Apache-2.0 53 6 5 Updated Oct 8, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata's past year of commit activity
    Python 15 Apache-2.0 7 7 9 Updated Oct 8, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI's past year of commit activity
    Python 83 BSD-3-Clause 6 5 2 Updated Oct 8, 2026
  • theislab/spatialdata-db-client's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 8, 2026
  • theislab/single-cell-best-practices's past year of commit activity
    Jupyter Notebook 1,280 277 3 0 Updated Oct 8, 2026
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials's past year of commit activity
    Jupyter Notebook 9 Apache-2.0 2 0 0 Updated Oct 8, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Oct 8, 2026
  • sckitflow Public
    theislab/sckitflow's past year of commit activity
    Python 7 BSD-3-Clause 1 26 (2 issues need help) 6 Updated Oct 8, 2026
  • LabCompass-reproducibility Public

    Repository for the collaboration with Goettgens Lab on Spectral Flow Cytometry (SFC) data.

    theislab/LabCompass-reproducibility's past year of commit activity
    Jupyter Notebook 1 BSD-2-Clause 0 0 1 Updated Oct 8, 2026
  • ReconEval Public

    Benchmarking for gene expression from single cell latent representations

    theislab/ReconEval's past year of commit activity
    Jupyter Notebook 21 MIT 3 1 0 Updated Oct 8, 2026