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@virtualcell

Virtual Cell

A Modeling and Simulation Environment for Cell Biology

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  1. vcell vcell Public

    Virtual Cell Framework

    Java 140 35

  2. vcell-fvsolver vcell-fvsolver Public

    VCell Finite Volume PDE solver

    C++ 2 1

  3. vcell-solvers vcell-solvers Public

    Virtual Cell solvers

    C 7 6

  4. vcell-fiji vcell-fiji Public

    A tool that loads VCell simulation results into ImageJ and performs statistical analysis.

    Java 2 1

  5. pyvcell pyvcell Public

    Python 4

  6. libvcell libvcell Public

    Java 1

Repositories

Showing 10 of 34 repositories
  • vcell Public

    Virtual Cell Framework

    virtualcell/vcell's past year of commit activity
    Java 140 35 299 (3 issues need help) 38 Updated Oct 8, 2026
  • vcell-fenics Public

    A Reaction-Diffusion-Advection solver for Cell Biology based on FEniCS

    virtualcell/vcell-fenics's past year of commit activity
    Python 0 MIT 0 10 2 Updated Oct 8, 2026
  • pyvcell Public
    virtualcell/pyvcell's past year of commit activity
    Python 4 MIT 0 6 3 Updated Oct 8, 2026
  • libvcell Public
    virtualcell/libvcell's past year of commit activity
    Java 1 MIT 0 0 0 Updated Oct 8, 2026
  • vcell-fvsolver Public

    VCell Finite Volume PDE solver

    virtualcell/vcell-fvsolver's past year of commit activity
    C++ 2 1 1 3 Updated Oct 8, 2026
  • vcell-chombo Public
    virtualcell/vcell-chombo's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 4, 2026
  • Smoldyn Public Forked from ssandrews/Smoldyn

    Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions

    virtualcell/Smoldyn's past year of commit activity
    C++ 0 GPL-3.0 16 0 0 Updated Oct 3, 2026
  • vcell-ode Public

    The ODE focused solvers VCell utilizes in it's main applications

    virtualcell/vcell-ode's past year of commit activity
    C 1 0 4 0 Updated Oct 1, 2026
  • vcell-mbsolver Public

    Moving boundary solver standalone, linkable library and python bindings.

    virtualcell/vcell-mbsolver's past year of commit activity
    C 1 MIT 0 1 0 Updated Sep 30, 2026
  • vcell-nfsim Public

    NFsim library and standalone executable.

    virtualcell/vcell-nfsim's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 30, 2026
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